diff --git a/codeflash/code_utils/code_utils.py b/codeflash/code_utils/code_utils.py
index 806f76285..45f85bee2 100644
--- a/codeflash/code_utils/code_utils.py
+++ b/codeflash/code_utils/code_utils.py
@@ -173,14 +173,14 @@ def get_qualified_name(module_name: str, full_qualified_name: str) -> str:
 
 def module_name_from_file_path(file_path: Path, project_root_path: Path, *, traverse_up: bool = False) -> str:
     try:
-        relative_path = file_path.relative_to(project_root_path)
+        relative_path = file_path.resolve().relative_to(project_root_path.resolve())
         return relative_path.with_suffix("").as_posix().replace("/", ".")
     except ValueError:
         if traverse_up:
             parent = file_path.parent
             while parent not in (project_root_path, parent.parent):
                 try:
-                    relative_path = file_path.relative_to(parent)
+                    relative_path = file_path.resolve().relative_to(parent.resolve())
                     return relative_path.with_suffix("").as_posix().replace("/", ".")
                 except ValueError:
                     parent = parent.parent
diff --git a/codeflash/context/code_context_extractor.py b/codeflash/context/code_context_extractor.py
index 09c0c564a..4579e6b9b 100644
--- a/codeflash/context/code_context_extractor.py
+++ b/codeflash/context/code_context_extractor.py
@@ -334,7 +334,7 @@ def extract_code_markdown_context_from_files(
                         helpers_of_fto.get(file_path, set()) | helpers_of_helpers.get(file_path, set())
                     ),
                 )
-            code_string_context = CodeString(code=code_context, file_path=file_path.relative_to(project_root_path))
+            code_string_context = CodeString(code=code_context, file_path=file_path.resolve().relative_to(project_root_path.resolve()))
             code_context_markdown.code_strings.append(code_string_context)
     # Extract code from file paths containing helpers of helpers
     for file_path, helper_function_sources in helpers_of_helpers_no_overlap.items():
@@ -365,7 +365,7 @@ def extract_code_markdown_context_from_files(
                     project_root=project_root_path,
                     helper_functions=list(helpers_of_helpers_no_overlap.get(file_path, set())),
                 )
-            code_string_context = CodeString(code=code_context, file_path=file_path.relative_to(project_root_path))
+            code_string_context = CodeString(code=code_context, file_path=file_path.resolve().relative_to(project_root_path.resolve()))
             code_context_markdown.code_strings.append(code_string_context)
     return code_context_markdown
 
diff --git a/codeflash/result/create_pr.py b/codeflash/result/create_pr.py
index 8e4913d32..7731c67f2 100644
--- a/codeflash/result/create_pr.py
+++ b/codeflash/result/create_pr.py
@@ -85,7 +85,7 @@ def existing_tests_source_for(
             ):
                 print_optimized_runtime = format_time(optimized_tests_to_runtimes[filename][qualified_name])
                 print_original_runtime = format_time(original_tests_to_runtimes[filename][qualified_name])
-                print_filename = filename.relative_to(tests_root).as_posix()
+                print_filename = filename.resolve().relative_to(tests_root.resolve()).as_posix()
                 greater = (
                     optimized_tests_to_runtimes[filename][qualified_name]
                     > original_tests_to_runtimes[filename][qualified_name]
@@ -192,9 +192,9 @@ def check_create_pr(
     if pr_number is not None:
         logger.info(f"Suggesting changes to PR #{pr_number} ...")
         owner, repo = get_repo_owner_and_name(git_repo)
-        relative_path = explanation.file_path.relative_to(root_dir).as_posix()
+        relative_path = explanation.file_path.resolve().relative_to(root_dir.resolve()).as_posix()
         build_file_changes = {
-            Path(p).relative_to(root_dir).as_posix(): FileDiffContent(
+            Path(p).resolve().relative_to(root_dir.resolve()).as_posix(): FileDiffContent(
                 oldContent=original_code[p], newContent=new_code[p]
             )
             for p in original_code
@@ -243,10 +243,10 @@ def check_create_pr(
         if not check_and_push_branch(git_repo, git_remote, wait_for_push=True):
             logger.warning("⏭️ Branch is not pushed, skipping PR creation...")
             return
-        relative_path = explanation.file_path.relative_to(root_dir).as_posix()
+        relative_path = explanation.file_path.resolve().relative_to(root_dir.resolve()).as_posix()
         base_branch = get_current_branch()
         build_file_changes = {
-            Path(p).relative_to(root_dir).as_posix(): FileDiffContent(
+            Path(p).resolve().relative_to(root_dir.resolve()).as_posix(): FileDiffContent(
                 oldContent=original_code[p], newContent=new_code[p]
             )
             for p in original_code
diff --git a/tests/test_code_context_extractor.py b/tests/test_code_context_extractor.py
index 28bf6fef8..8be6b549c 100644
--- a/tests/test_code_context_extractor.py
+++ b/tests/test_code_context_extractor.py
@@ -1820,7 +1820,7 @@ def get_system_details():
         hashing_context = code_ctx.hashing_code_context
         # The expected contexts
         expected_read_write_context = f"""
-```python:{main_file_path.relative_to(opt.args.project_root)}
+```python:{main_file_path.resolve().relative_to(opt.args.project_root.resolve())}
 import utility_module
 
 class Calculator:
@@ -2089,7 +2089,7 @@ def select_precision(precision, fallback_precision):
     else:
         return DEFAULT_PRECISION
 ```
-```python:{main_file_path.relative_to(opt.args.project_root)}
+```python:{main_file_path.resolve().relative_to(opt.args.project_root.resolve())}
 import utility_module
 
 class Calculator: